Różnorodność szlaków utleniania białek Dsb (disulfide bond) w świecie mikroorganizmów


Diversity of the Dsb (disulfide bond) oxidative protein folding pathways in microbial world
A. Dobosz, K. M. Bocian-Ostrzycka, E. K. Jagusztyn-Krynicka

1. Wprowadzenie. 2. Modelowy system szlaku utleniania Dsb Escherichia coli. 2.1. Charakterystyka białek EcDsbA i EcDsbB. 2.2. Szlaki utleniania i izomeryzacji/redukcji E. coli. 2.3. Rola motywu CXXC i pętli cis-Pro151 białka EcDsbA. 3. Różnorodność bakteryjnych szlaków oksydacji białek. 3.1. Zwielokrotniona liczba białek DsbA. 3.2. Różnorodność strukturalna monomerycznych białek DsbA. 3.3. Dimeryczne oksydoreduktazy DsbA. 3.4. Obecność lub brak białka pełniącego funkcję EcDsbB. 4. Specyficzność substratowa oksydoreduktaz DsbA. 4.1. Metody poszukiwania i lokalizacja substratów. 4.2. Czynniki wirulencji. 5. Inne systemy Dsb. 6. Podsumowanie

Abstract: The introduction of structural disulfide bonds is crucial to the stability and activity of many extra-cytoplasmic proteins. The disulfide bond formation is a rate-limiting step in the folding process of a protein. However, most microorganisms encode a machinery to catalyse this oxidative protein folding step. In prototypic Escherichia coli oxidative pathway, the introduction of disulfide bridges into folding proteins is mediated by the thioredoxin family members – Dsb system proteins. Correct oxidative protein folding in the E. coli envelope depends on both EcDsbA and EcDsbB. Periplasmic oxidoreductase EcDsbA is a key disulfide bond formation catalyst, which is maintained in its active form by membrane-bound protein EcDsbB. To date, over 300 EcDsbA homologues from different bacterial organisms have been identified. Nevertheless, the structure, function and interactions of EcDsbA still remain the best studied. The rapidly expanding number of sequenced bacterial genomes has revealed dramatic differences between the model E. coli oxidative pathway and the pathway in other microorganisms. In this article, we review current knowledge about EcDsbA and focus on the diversity of the disulfide bond generation pathways functioning in the microbial world.

1. Introduction. 2. The classical Escherichia coli thiol oxidizing pathway. 2.1. Characteristics of EcDsbA and EcDsbB proteins. 2.2. E. coli oxidative and isomerization/reduction pathways. 2.3. The role of EcDsbA CXXC motif and cis-Pro151 loop. 3. Variety of bacterial oxidative pathways. 3.1. Multiplied number of DsbAs. 3.2. Structural diversity of monomeric DsbA proteins. 3.3. Dimeric DsbA oxidoreductases. 3.4. The presence or absence of a protein acting as EcDsbB. 4. Substrate specificity of DsbA oxidoreductases. 4.1. Procedures for DsbA substrates identification and methods of location analysis. 4.2. Virulence associated with DsbA substrates. 5. Other Dsb systems. 6. Conclusions